SNP Detail For rs1598848
1.Mapping Information
Human SNP ID rs1598848
Human chromosome chr21
Human SNP position 27573957
Pig chromosome chr13
Pig SNP position 201247540
2.Annotation Information
PubMed ID24483146
JournalBMC Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/24483146
StudyDiscovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.
Disease/TraitResponse to cytidine analogues (gemcitabine)
Initial sample60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region21q21.3
Chromosome idchr21
Chromosome position27573957
Reported geneintergenic
Mapped geneLOC105372762 - LOC105372763
Upstream gene id105372762
Downstream gene id105372763
SNP gene ids
Upstream gene distance125313
Downstream gene distance64624
SNP risk allelers1598848-?
SNPsrs1598848
Merged0
SNP id current1598848
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [1348798]
CNVN
Mapped traitresponse to gemcitabine
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0036272
Study accessionGCST002343