Human SNP ID | rs1598848 |
---|---|
Human chromosome | chr21 |
Human SNP position | 27573957 |
Pig chromosome | chr13 |
Pig SNP position | 201247540 |
PubMed ID | 24483146 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/24483146 |
Study | Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. |
Disease/Trait | Response to cytidine analogues (gemcitabine) |
Initial sample | 60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 21q21.3 |
Chromosome id | chr21 |
Chromosome position | 27573957 |
Reported gene | intergenic |
Mapped gene | LOC105372762 - LOC105372763 |
Upstream gene id | 105372762 |
Downstream gene id | 105372763 |
SNP gene ids | |
Upstream gene distance | 125313 |
Downstream gene distance | 64624 |
SNP risk allele | rs1598848-? |
SNPs | rs1598848 |
Merged | 0 |
SNP id current | 1598848 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [1348798] |
CNV | N |
Mapped trait | response to gemcitabine |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0036272 |
Study accession | GCST002343 |