SNP Detail For rs1581803
1.Mapping Information
Human SNP ID rs1581803
Human chromosome chr1
Human SNP position 152619805
Pig chromosome chr4
Pig SNP position 105814924
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region1q21.3
Chromosome idchr1
Chromosome position152619805
Reported geneLCE3A
Mapped geneLCE3B - LCE3A
Upstream gene id353143
Downstream gene id353142
SNP gene ids
Upstream gene distance5707
Downstream gene distance3029
SNP risk allelers1581803-?
SNPsrs1581803
Merged0
SNP id current1581803
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000000000002
Pvalue mlog11.698970004336
P value text(Psoriasis)
Or beta1.22
%95 Ci[1.15鈥?.30]
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740