Human SNP ID | rs1573036 |
---|---|
Human chromosome | chrX |
Human SNP position | 110576840 |
Pig chromosome | chrX |
Pig SNP position | 104434675 |
PubMed ID | 22829776 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22829776 |
Study | A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation. |
Disease/Trait | Sex hormone-binding globulin levels |
Initial sample | 21,791 European ancestry individuals |
Replication sample | 8,175 European ancestry individuals |
Region | Xq23 |
Chromosome id | chrX |
Chromosome position | 110576840 |
Reported gene | TDGF3 |
Mapped gene | TDGF1P3 - CHRDL1 |
Upstream gene id | 6998 |
Downstream gene id | 91851 |
SNP gene ids | |
Upstream gene distance | 53819 |
Downstream gene distance | 97016 |
SNP risk allele | rs1573036-T |
SNPs | rs1573036 |
Merged | 0 |
SNP id current | 1573036 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.031 |
P value | 0.00000000000004 |
Pvalue mlog | 13.397940008672 |
P value text | (Men + Women) |
Or beta | 0.028 |
%95 Ci | [0.021-0.035] umol/L increase |
Platform | Affymetrix, Illumina [2543887] (imputed) |
CNV | N |
Mapped trait | sex hormone globulin binding measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004696 |
Study accession | GCST001612 |
PubMed ID | 22829776 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22829776 |
Study | A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation. |
Disease/Trait | Sex hormone-binding globulin levels |
Initial sample | 21,791 European ancestry individuals |
Replication sample | 8,175 European ancestry individuals |
Region | Xq23 |
Chromosome id | chrX |
Chromosome position | 110576840 |
Reported gene | TDGF3 |
Mapped gene | TDGF1P3 - CHRDL1 |
Upstream gene id | 6998 |
Downstream gene id | 91851 |
SNP gene ids | |
Upstream gene distance | 53819 |
Downstream gene distance | 97016 |
SNP risk allele | rs1573036-T |
SNPs | rs1573036 |
Merged | 0 |
SNP id current | 1573036 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.031 |
P value | 0.0000000000000003 |
Pvalue mlog | 15.5228787452803 |
P value text | (Men) |
Or beta | 0.035 |
%95 Ci | [0.027-0.043] umol/L increase |
Platform | Affymetrix, Illumina [2543887] (imputed) |
CNV | N |
Mapped trait | sex hormone globulin binding measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004696 |
Study accession | GCST001612 |