SNP Detail For rs1572299
1.Mapping Information
Human SNP ID rs1572299
Human chromosome chr9
Human SNP position 118584139
Pig chromosome chr1
Pig SNP position 290870934
2.Annotation Information
PubMed ID19571808
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/19571808
StudyCommon variants conferring risk of schizophrenia.
Disease/TraitSchizophrenia
Initial sample2,663 European ancestry cases, 13,498 European ancestry controls
Replication sample10,282 European ancestry cases, 21,093 European ancestry controls
Region9q33.1
Chromosome idchr9
Chromosome position118584139
Reported geneintergenic
Mapped geneLOC105376248 - LOC105376249
Upstream gene id105376248
Downstream gene id105376249
SNP gene ids
Upstream gene distance60642
Downstream gene distance8922
SNP risk allelers1572299-A
SNPsrs1572299
Merged0
SNP id current1572299
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.08
%95 Ci[NR]
PlatformIllumina [314868]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST000435