SNP Detail For rs1571801
1.Mapping Information
Human SNP ID rs1571801
Human chromosome chr9
Human SNP position 121665094
Pig chromosome chr1
Pig SNP position 294113195
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region8q21.13 x 9q33.2
Chromosome idchr8 x 9
Chromosome position82161594 x 121665094
Reported geneSNX16 x DAB2IC
Mapped geneLOC105375930 x DAB2IP
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers13264970-? x rs1571801-?
SNPsrs13264970 x rs1571801
Merged
SNP id current
Contextupstream_gene_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.2987
%95 Ci[1.16-1.45]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region8q21.13 x 9q33.2
Chromosome idchr8 x 9
Chromosome position78044423 x 121665094
Reported genePKIA x DAB2IC
Mapped geneLOC105375910 - LOC105375911 x DAB2IP
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers2219968-? x rs1571801-?
SNPsrs2219968 x rs1571801
Merged
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.3
%95 Ci[1.17-1.43]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370