Human SNP ID | rs1571801 |
---|---|
Human chromosome | chr9 |
Human SNP position | 121665094 |
Pig chromosome | chr1 |
Pig SNP position | 294113195 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 8q21.13 x 9q33.2 |
Chromosome id | chr8 x 9 |
Chromosome position | 82161594 x 121665094 |
Reported gene | SNX16 x DAB2IC |
Mapped gene | LOC105375930 x DAB2IP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13264970-? x rs1571801-? |
SNPs | rs13264970 x rs1571801 |
Merged | |
SNP id current | |
Context | upstream_gene_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.2987 |
%95 Ci | [1.16-1.45] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |
PubMed ID | 22219177 |
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 8q21.13 x 9q33.2 |
Chromosome id | chr8 x 9 |
Chromosome position | 78044423 x 121665094 |
Reported gene | PKIA x DAB2IC |
Mapped gene | LOC105375910 - LOC105375911 x DAB2IP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2219968-? x rs1571801-? |
SNPs | rs2219968 x rs1571801 |
Merged | |
SNP id current | |
Context | intergenic_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.3 |
%95 Ci | [1.17-1.43] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |