Human SNP ID | rs1571218 |
---|---|
Human chromosome | chr20 |
Human SNP position | 6389406 |
Pig chromosome | chr17 |
Pig SNP position | 16719771 |
PubMed ID | 23300701 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23300701 |
Study | Genome-wide search for gene-gene interactions in colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 8,380 European ancestry cases, 10,558 European ancestry controls |
Replication sample | 2,527 European ancestry cases, 2,628 European ancestry controls |
Region | 12q21.1 x 20p12.3 |
Chromosome id | chr12 x 20 |
Chromosome position | 72020783 x 6389406 |
Reported gene | intergenic x intergenic |
Mapped gene | TPH2 x LOC149844 - CASC20 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10879357-? x rs1571218-? |
SNPs | rs10879357 x rs1571218 |
Merged | |
SNP id current | |
Context | intron_variant x intergenic_variant |
Intergenic | |
Allele frequency | 0.62 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.14-1.39] |
Platform | Illumina [2011668] |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST001794 |