SNP Detail For rs1571218
1.Mapping Information
Human SNP ID rs1571218
Human chromosome chr20
Human SNP position 6389406
Pig chromosome chr17
Pig SNP position 16719771
2.Annotation Information
PubMed ID23300701
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23300701
StudyGenome-wide search for gene-gene interactions in colorectal cancer.
Disease/TraitColorectal cancer
Initial sample8,380 European ancestry cases, 10,558 European ancestry controls
Replication sample2,527 European ancestry cases, 2,628 European ancestry controls
Region12q21.1 x 20p12.3
Chromosome idchr12 x 20
Chromosome position72020783 x 6389406
Reported geneintergenic x intergenic
Mapped geneTPH2 x LOC149844 - CASC20
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10879357-? x rs1571218-?
SNPsrs10879357 x rs1571218
Merged
SNP id current
Contextintron_variant x intergenic_variant
Intergenic
Allele frequency0.62
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.25
%95 Ci[1.14-1.39]
PlatformIllumina [2011668]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001794