SNP Detail For rs1570989
1.Mapping Information
Human SNP ID rs1570989
Human chromosome chr6
Human SNP position 12048594
Pig chromosome chr7
Pig SNP position 8955372
2.Annotation Information
PubMed ID22488850
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22488850
StudyGenome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.
Disease/TraitAlcohol and nictotine co-dependence
Initial sample818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls
Replication sampleNA
Region6p24.1
Chromosome idchr6
Chromosome position12048594
Reported geneHIVEP1
Mapped geneHIVEP1
Upstream gene id
Downstream gene id
SNP gene ids3096
Upstream gene distance
Downstream gene distance
SNP risk allelers1570989-?
SNPsrs1570989
Merged0
SNP id current1570989
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [805814]
CNVN
Mapped traitalcohol and nicotine codependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004776
Study accessionGCST001471