Human SNP ID | rs1569723 |
---|---|
Human chromosome | chr20 |
Human SNP position | 46113425 |
Pig chromosome | chr17 |
Pig SNP position | 53928056 |
PubMed ID | 22446961 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22446961 |
Study | Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis. |
Disease/Trait | Kawasaki disease |
Initial sample | 622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls |
Replication sample | 261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls |
Region | 20q13.12 |
Chromosome id | chr20 |
Chromosome position | 46113425 |
Reported gene | CD40 |
Mapped gene | NCOA5 - CD40 |
Upstream gene id | 57727 |
Downstream gene id | 958 |
SNP gene ids | |
Upstream gene distance | 23473 |
Downstream gene distance | 4825 |
SNP risk allele | rs1569723-A |
SNPs | rs1569723 |
Merged | 0 |
SNP id current | 1569723 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.548 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 1.415 |
%95 Ci | [1.256-1.594] |
Platform | Affymetrix [716935] |
CNV | N |
Mapped trait | mucocutaneous lymph node syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004246 |
Study accession | GCST001456 |
PubMed ID | 23128233 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/23128233 |
Study | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
Disease/Trait | Inflammatory bowel disease |
Initial sample | 12,924 European ancestry cases, 21,442 European ancestry controls |
Replication sample | 25,683 European ancestry cases, 17,015 European ancestry controls |
Region | 20q13.12 |
Chromosome id | chr20 |
Chromosome position | 46113425 |
Reported gene | CD40, MMP9, PLTP |
Mapped gene | NCOA5 - CD40 |
Upstream gene id | 57727 |
Downstream gene id | 958 |
SNP gene ids | |
Upstream gene distance | 23473 |
Downstream gene distance | 4825 |
SNP risk allele | rs1569723-C |
SNPs | rs1569723 |
Merged | 0 |
SNP id current | 1569723 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.259 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | |
Or beta | 1.091 |
%95 Ci | [1.056-1.126] |
Platform | Affymetrix, Illumina [1230000] (imputed) |
CNV | N |
Mapped trait | inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST001725 |