Human SNP ID | rs1569175 |
---|---|
Human chromosome | chr2 |
Human SNP position | 200157231 |
Pig chromosome | chr15 |
Pig SNP position | 115022585 |
PubMed ID | 19176441 |
---|---|
Journal | JAMA |
Link | www.ncbi.nlm.nih.gov/pubmed/19176441 |
Study | Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia. |
Disease/Trait | Response to treatment for acute lymphoblastic leukemia |
Initial sample | 356 European ancestry cases, 53 Black cases, 78 cases |
Replication sample | NA |
Region | 2q33.1 |
Chromosome id | chr2 |
Chromosome position | 200157231 |
Reported gene | C2orf47 |
Mapped gene | LOC105373834 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105373834 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1569175-T |
SNPs | rs1569175 |
Merged | 0 |
SNP id current | 1569175 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 2.73 |
%95 Ci | [1.52-4.93] |
Platform | Affymetrix [476796] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia, response to antineoplastic agent |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST000323 |