SNP Detail For rs1569175
1.Mapping Information
Human SNP ID rs1569175
Human chromosome chr2
Human SNP position 200157231
Pig chromosome chr15
Pig SNP position 115022585
2.Annotation Information
PubMed ID19176441
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/19176441
StudyGenome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.
Disease/TraitResponse to treatment for acute lymphoblastic leukemia
Initial sample356 European ancestry cases, 53 Black cases, 78 cases
Replication sampleNA
Region2q33.1
Chromosome idchr2
Chromosome position200157231
Reported geneC2orf47
Mapped geneLOC105373834
Upstream gene id
Downstream gene id
SNP gene ids105373834
Upstream gene distance
Downstream gene distance
SNP risk allelers1569175-T
SNPsrs1569175
Merged0
SNP id current1569175
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta2.73
%95 Ci[1.52-4.93]
PlatformAffymetrix [476796]
CNVN
Mapped traitacute lymphoblastic leukemia, response to antineoplastic agent
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220, http://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST000323