SNP Detail For rs1564981
1.Mapping Information
Human SNP ID rs1564981
Human chromosome chr16
Human SNP position 50952397
Pig chromosome chr6
Pig SNP position 30538486
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region16q12.1
Chromosome idchr16
Chromosome position50952397
Reported geneCYLD
Mapped geneLOC102724940 - LOC101927334
Upstream gene id102724940
Downstream gene id101927334
SNP gene ids
Upstream gene distance51336
Downstream gene distance65361
SNP risk allelers1564981-A
SNPsrs1564981
Merged0
SNP id current1564981
Contextintergenic_variant
Intergenic1
Allele frequency0.5
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(LSBMD)
Or beta0.04
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482