Human SNP ID | rs1562990 |
---|---|
Human chromosome | chr11 |
Human SNP position | 60255614 |
Pig chromosome | chr2 |
Pig SNP position | 10892382 |
PubMed ID | 21627779 |
---|---|
Journal | Genome Med |
Link | www.ncbi.nlm.nih.gov/pubmed/21627779 |
Study | The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer__s disease. |
Disease/Trait | Alzheimer__s disease |
Initial sample | 319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls |
Replication sample | 4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 60255614 |
Reported gene | MS4A |
Mapped gene | MS4A4E - MS4A4A |
Upstream gene id | 643680 |
Downstream gene id | 51338 |
SNP gene ids | |
Upstream gene distance | 12500 |
Downstream gene distance | 24927 |
SNP risk allele | rs1562990-? |
SNPs | rs1562990 |
Merged | 0 |
SNP id current | 1562990 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.58 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.10-1.18] |
Platform | Affymetrix, Illumina [696707] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST001087 |