SNP Detail For rs1562990
1.Mapping Information
Human SNP ID rs1562990
Human chromosome chr11
Human SNP position 60255614
Pig chromosome chr2
Pig SNP position 10892382
2.Annotation Information
PubMed ID21627779
JournalGenome Med
Linkwww.ncbi.nlm.nih.gov/pubmed/21627779
StudyThe membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls
Replication sample4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls
Region11q12.2
Chromosome idchr11
Chromosome position60255614
Reported geneMS4A
Mapped geneMS4A4E - MS4A4A
Upstream gene id643680
Downstream gene id51338
SNP gene ids
Upstream gene distance12500
Downstream gene distance24927
SNP risk allelers1562990-?
SNPsrs1562990
Merged0
SNP id current1562990
Contextintergenic_variant
Intergenic1
Allele frequency0.58
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta1.14
%95 Ci[1.10-1.18]
PlatformAffymetrix, Illumina [696707] (imputed)
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST001087