Human SNP ID | rs1562430 |
---|---|
Human chromosome | chr8 |
Human SNP position | 127375606 |
Pig chromosome | chr4 |
Pig SNP position | 13017779 |
PubMed ID | 21263130 |
---|---|
Journal | J Natl Cancer Inst |
Link | www.ncbi.nlm.nih.gov/pubmed/21263130 |
Study | Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study. |
Disease/Trait | Breast cancer |
Initial sample | 2,839 European ancestry cases, 3,507 European ancestry controls |
Replication sample | 9,041 European ancestry cases, 8,980 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127375606 |
Reported gene | intergenic |
Mapped gene | CASC8, CASC21 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 727677, 103021164 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1562430-A |
SNPs | rs1562430 |
Merged | 0 |
SNP id current | 1562430 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.6 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.22] |
Platform | Illumina [~ 296114] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000952 |
PubMed ID | 20453838 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20453838 |
Study | Genome-wide association study identifies five new breast cancer susceptibility loci. |
Disease/Trait | Breast cancer |
Initial sample | 3,659 European ancestry cases, 4,897 European ancestry controls |
Replication sample | 12,576 European ancestry cases, 12,223 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127375606 |
Reported gene | intergenic |
Mapped gene | CASC8, CASC21 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 727677, 103021164 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1562430-T |
SNPs | rs1562430 |
Merged | 0 |
SNP id current | 1562430 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.10-1.25] |
Platform | Illumina [582886] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000678 |