Human SNP ID | rs1561927 |
---|---|
Human chromosome | chr8 |
Human SNP position | 128555832 |
Pig chromosome | chr4 |
Pig SNP position | 12036347 |
PubMed ID | 25086665 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25086665 |
Study | Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. |
Disease/Trait | Pancreatic cancer |
Initial sample | 1,582 European ancestry cases, 5,203 European ancestry controls |
Replication sample | 6,101 European ancestry cases, 9,194 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 128555832 |
Reported gene | LINC00977, MIR1208, PVT1, MYC |
Mapped gene | LINC00824 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101927774 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1561927-T |
SNPs | rs1561927 |
Merged | 0 |
SNP id current | 1561927 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.721 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.2] |
Platform | Illumina [608202] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST002553 |
PubMed ID | 24509480 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24509480 |
Study | Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. |
Disease/Trait | Type 2 diabetes |
Initial sample | 12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ance |
Replication sample | 21,491 European ancestry cases, 55,647 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 128555832 |
Reported gene | TMEM75 |
Mapped gene | LINC00824 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101927774 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1561927-C |
SNPs | rs1561927 |
Merged | 0 |
SNP id current | 1561927 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.06 |
%95 Ci | [1.04-1.09] |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002352 |