Human SNP ID | rs1559777 |
---|---|
Human chromosome | chr15 |
Human SNP position | 57788419 |
Pig chromosome | chr1 |
Pig SNP position | 126316872 |
PubMed ID | 23049088 |
---|---|
Journal | Invest Ophthalmol Vis Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23049088 |
Study | A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population. |
Disease/Trait | Myopia (pathological) |
Initial sample | 187 European ancestry cases, 1064 European ancestry controls |
Replication sample | |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 57788419 |
Reported gene | intergenic |
Mapped gene | LOC105370834 - ALDH1A2 |
Upstream gene id | 105370834 |
Downstream gene id | 8854 |
SNP gene ids | |
Upstream gene distance | 13095 |
Downstream gene distance | 165005 |
SNP risk allele | rs1559777-? |
SNPs | rs1559777 |
Merged | 0 |
SNP id current | 1559777 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [152234] |
CNV | N |
Mapped trait | pathological myopia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004207 |
Study accession | GCST001712 |