PigVar

1.Mapping Information

Human SNP ID	rs1557765
Human chromosome	chr11
Human SNP position	17382092
Pig chromosome	chr2
Pig SNP position	44821891

2.Annotation Information

PubMed ID	24564958
Journal	Mol Autism
Link	www.ncbi.nlm.nih.gov/pubmed/24564958
Study	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.
Disease/Trait	Social communication problems
Initial sample	Up to 5,628 European ancestry individuals
Replication sample	NA
Region	11p15.1
Chromosome id	chr11
Chromosome position	17382092
Reported gene	KCNJ11
Mapped gene	KCNJ11
Upstream gene id
Downstream gene id
SNP gene ids	3767
Upstream gene distance
Downstream gene distance
SNP risk allele	rs1557765-C
SNPs	rs1557765
Merged	0
SNP id current	1557765
Context	non_coding_transcript_exon_variant
Intergenic	0
Allele frequency	0.63
P value	0.000007
Pvalue mlog	5.15490195998574
P value text	(Age 8)
Or beta	0.12
%95 Ci	[0.061-0.179] unit increase
Platform	Illumina [2293137] (imputed)
CNV	N
Mapped trait	social communication impairment
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0005427
Study accession	GCST002367

PubMed ID	25673413
Journal	Nature
Link	www.ncbi.nlm.nih.gov/pubmed/25673413
Study	Genetic studies of body mass index yield new insights for obesity biology.
Disease/Trait	Body mass index
Initial sample	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sample	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region	11p15.1
Chromosome id	chr11
Chromosome position	17382092
Reported gene	KCNJ11
Mapped gene	KCNJ11
Upstream gene id
Downstream gene id
SNP gene ids	3767
Upstream gene distance
Downstream gene distance
SNP risk allele	rs1557765-C
SNPs	rs1557765
Merged	0
SNP id current	1557765
Context	non_coding_transcript_exon_variant
Intergenic	0
Allele frequency	0.596
P value	0.000002
Pvalue mlog	5.69897000433601
P value text	(EA)
Or beta	0.015
%95 Ci	[0.0089-0.0211] kg/m2 increase
Platform	Affymetrix, Illumina [2550021]
CNV	N
Mapped trait	body mass index
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0004340
Study accession	GCST002783

PubMed ID	25673413
Journal	Nature
Link	www.ncbi.nlm.nih.gov/pubmed/25673413
Study	Genetic studies of body mass index yield new insights for obesity biology.
Disease/Trait	Body mass index
Initial sample	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sample	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region	11p15.1
Chromosome id	chr11
Chromosome position	17382092
Reported gene	KCNJ11
Mapped gene	KCNJ11
Upstream gene id
Downstream gene id
SNP gene ids	3767
Upstream gene distance
Downstream gene distance
SNP risk allele	rs1557765-C
SNPs	rs1557765
Merged	0
SNP id current	1557765
Context	non_coding_transcript_exon_variant
Intergenic	0
Allele frequency	0.601
P value	0.0000006
Pvalue mlog	6.22184874961635
P value text
Or beta	0.015
%95 Ci	[0.0091-0.0213] kg/m2 increase
Platform	Affymetrix, Illumina [2550021]
CNV	N
Mapped trait	body mass index
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0004340
Study accession	GCST002783

THE PIG VARIATIONS AND POSITIVE SELECTION DATABASE