SNP Detail For rs1556032
1.Mapping Information
Human SNP ID rs1556032
Human chromosome chr9
Human SNP position 14446003
Pig chromosome chr1
Pig SNP position 231829882
2.Annotation Information
PubMed ID19754311
JournalJ Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/19754311
StudyGenomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).
Disease/TraitAIDS
Initial sample85 European ancestry cases, 2,049 European ancestry controls
Replication sampleNA
Region9p22.3
Chromosome idchr9
Chromosome position14446003
Reported geneNR
Mapped geneTRH-GTG1-9 - ZDHHC21
Upstream gene id100009607
Downstream gene id340481
SNP gene ids
Upstream gene distance11992
Downstream gene distance109498
SNP risk allelers1556032-C
SNPsrs1556032
Merged0
SNP id current1556032
Contextintergenic_variant
Intergenic1
Allele frequency0.49
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta2.05
%95 Ci[1.48-2.84]
PlatformIllumina [291119]
CNVN
Mapped traitAIDS
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000765
Study accessionGCST000487