Human SNP ID | rs1556032 |
---|---|
Human chromosome | chr9 |
Human SNP position | 14446003 |
Pig chromosome | chr1 |
Pig SNP position | 231829882 |
PubMed ID | 19754311 |
---|---|
Journal | J Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/19754311 |
Study | Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). |
Disease/Trait | AIDS |
Initial sample | 85 European ancestry cases, 2,049 European ancestry controls |
Replication sample | NA |
Region | 9p22.3 |
Chromosome id | chr9 |
Chromosome position | 14446003 |
Reported gene | NR |
Mapped gene | TRH-GTG1-9 - ZDHHC21 |
Upstream gene id | 100009607 |
Downstream gene id | 340481 |
SNP gene ids | |
Upstream gene distance | 11992 |
Downstream gene distance | 109498 |
SNP risk allele | rs1556032-C |
SNPs | rs1556032 |
Merged | 0 |
SNP id current | 1556032 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.49 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 2.05 |
%95 Ci | [1.48-2.84] |
Platform | Illumina [291119] |
CNV | N |
Mapped trait | AIDS |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000765 |
Study accession | GCST000487 |