Human SNP ID | rs1553318 |
---|---|
Human chromosome | chr5 |
Human SNP position | 157052312 |
Pig chromosome | chr16 |
Pig SNP position | 71956334 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 157052312 |
Reported gene | TIMD4, HAVCR1 |
Mapped gene | HAVCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26762 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1553318-C |
SNPs | rs1553318 |
Merged | |
SNP id current | 1553318 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.65 |
P value | 2E-21 |
Pvalue mlog | 20.698970004336 |
P value text | |
Or beta | 0.058 |
%95 Ci | [0.046-0.07] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Triglycerides |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 157052312 |
Reported gene | TIMD4, HAVCR1 |
Mapped gene | HAVCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26762 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1553318-C |
SNPs | rs1553318 |
Merged | |
SNP id current | 1553318 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.65 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 0.042 |
%95 Ci | [0.03-0.054] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST002897 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 157052312 |
Reported gene | TIMD4, HAVCR1 |
Mapped gene | HAVCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26762 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1553318-C |
SNPs | rs1553318 |
Merged | |
SNP id current | 1553318 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.65 |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | |
Or beta | 0.05 |
%95 Ci | [0.038-0.062] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |