SNP Detail For rs1551398
1.Mapping Information
Human SNP ID rs1551398
Human chromosome chr8
Human SNP position 125527809
Pig chromosome chr4
Pig SNP position 14835340
2.Annotation Information
PubMed ID18587394
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18587394
StudyGenome-wide association defines more than 30 distinct susceptibility loci for Crohn__s disease.
Disease/TraitCrohn__s disease
Initial sample3,230 European ancestry cases, 4,829 European ancestry controls
Replication sample1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls
Region8q24.13
Chromosome idchr8
Chromosome position125527809
Reported geneintergenic
Mapped geneLOC105375745
Upstream gene id
Downstream gene id
SNP gene ids105375745
Upstream gene distance
Downstream gene distance
SNP risk allelers1551398-A
SNPsrs1551398
Merged0
SNP id current1551398
Contextintron_variant
Intergenic0
Allele frequency0.62
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.08
%95 Ci[NR]
PlatformAffymetrix, Illumina [635547] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000207