SNP Detail For rs1550623
1.Mapping Information
Human SNP ID rs1550623
Human chromosome chr2
Human SNP position 173348166
Pig chromosome chr15
Pig SNP position 88742133
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region2q31.1
Chromosome idchr2
Chromosome position173348166
Reported geneCDCA7
Mapped geneRPS2P18 - CDCA7
Upstream gene id643960
Downstream gene id83879
SNP gene ids
Upstream gene distance49612
Downstream gene distance5851
SNP risk allelers1550623-A
SNPsrs1550623
Merged0
SNP id current1550623
Contextintron_variant
Intergenic1
Allele frequency0.84
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.06
%95 Ci[1.03-1.09]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937