SNP Detail For rs1550584
1.Mapping Information
Human SNP ID rs1550584
Human chromosome chr14
Human SNP position 85216709
Pig chromosome chr7
Pig SNP position 113961327
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region14q31.3
Chromosome idchr14
Chromosome position85216709
Reported geneNR
Mapped geneLOC105370604 - LOC105370605
Upstream gene id105370604
Downstream gene id105370605
SNP gene ids
Upstream gene distance22007
Downstream gene distance170468
SNP risk allelers1550584-C
SNPsrs1550584
Merged0
SNP id current1550584
Contextintron_variant
Intergenic1
Allele frequency0.469772138901295
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP18)
Or beta0.1382
%95 Ci[0.078-0.198] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848