SNP Detail For rs1550576
1.Mapping Information
Human SNP ID rs1550576
Human chromosome chr15
Human SNP position 57921216
Pig chromosome chr1
Pig SNP position 126132047
2.Annotation Information
PubMed ID19609347
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19609347
StudyA genome-wide association study of hypertension and blood pressure in African Americans.
Disease/TraitHypertension
Initial sample509 African American cases, 508 African American controls
Replication sample366 West African ancestry cases, 614 West African ancestry controls
Region15q21.3
Chromosome idchr15
Chromosome position57921216
Reported geneALDH1A2
Mapped geneLOC105370834 - ALDH1A2
Upstream gene id105370834
Downstream gene id8854
SNP gene ids
Upstream gene distance145892
Downstream gene distance32208
SNP risk allelers1550576-?
SNPsrs1550576
Merged0
SNP id current1550576
Contextintergenic_variant
Intergenic1
Allele frequency0.86
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.92
%95 Ci[NR]
PlatformAffymetrix [808465]
CNVN
Mapped traithypertension
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000537
Study accessionGCST000447