Human SNP ID | rs1549733 |
---|---|
Human chromosome | chr2 |
Human SNP position | 217607449 |
Pig chromosome | chr15 |
Pig SNP position | 132765966 |
PubMed ID | 25631615 |
---|---|
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic disc area |
Initial sample | 15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals |
Replication sample | NA |
Region | 2q35 |
Chromosome id | chr2 |
Chromosome position | 217607449 |
Reported gene | DIRC3 |
Mapped gene | DIRC3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 729582 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1549733-T |
SNPs | rs1549733 |
Merged | 0 |
SNP id current | 1549733 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 0.031 |
%95 Ci | [0.021-0.041] unit increase |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | optic disc area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006937 |
Study accession | GCST002763 |
PubMed ID | 25631615 |
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic disc area |
Initial sample | 15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals |
Replication sample | NA |
Region | 2q35 |
Chromosome id | chr2 |
Chromosome position | 217607449 |
Reported gene | DIRC3 |
Mapped gene | DIRC3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 729582 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1549733-T |
SNPs | rs1549733 |
Merged | 0 |
SNP id current | 1549733 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (EA) |
Or beta | 0.033 |
%95 Ci | [0.021-0.045] unit increase |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | optic disc area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006937 |
Study accession | GCST002763 |