SNP Detail For rs1547374
1.Mapping Information
Human SNP ID rs1547374
Human chromosome chr21
Human SNP position 42358786
Pig chromosome chr13
Pig SNP position 216084702
2.Annotation Information
PubMed ID22158540
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22158540
StudyGenome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.
Disease/TraitPancreatic cancer
Initial sample981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls
Replication sample2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls
Region21q22.3
Chromosome idchr21
Chromosome position42358786
Reported geneTFF1
Mapped geneLOC105372815
Upstream gene id
Downstream gene id
SNP gene ids105372815
Upstream gene distance
Downstream gene distance
SNP risk allelers1547374-A
SNPsrs1547374
Merged0
SNP id current1547374
Contextdownstream_gene_variant
Intergenic0
Allele frequencyNR
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta1.27
%95 Ci[1.19-1.35]
PlatformAffymetrix [666141]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST001350