Human SNP ID | rs1547374 |
---|---|
Human chromosome | chr21 |
Human SNP position | 42358786 |
Pig chromosome | chr13 |
Pig SNP position | 216084702 |
PubMed ID | 22158540 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22158540 |
Study | Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations. |
Disease/Trait | Pancreatic cancer |
Initial sample | 981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls |
Replication sample | 2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls |
Region | 21q22.3 |
Chromosome id | chr21 |
Chromosome position | 42358786 |
Reported gene | TFF1 |
Mapped gene | LOC105372815 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372815 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1547374-A |
SNPs | rs1547374 |
Merged | 0 |
SNP id current | 1547374 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | 1.27 |
%95 Ci | [1.19-1.35] |
Platform | Affymetrix [666141] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST001350 |