Human SNP ID | rs1547201 |
---|---|
Human chromosome | chr9 |
Human SNP position | 96054202 |
Pig chromosome | chr10 |
Pig SNP position | 30130343 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 9q22.32 |
Chromosome id | chr9 |
Chromosome position | 96054202 |
Reported gene | NR |
Mapped gene | ERCC6L2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 375748 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1547201-C |
SNPs | rs1547201 |
Merged | 0 |
SNP id current | 1547201 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.530022081441923 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (IGP45) |
Or beta | 0.1416 |
%95 Ci | [0.08-0.203] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |
PubMed ID | 23382691 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 9q22.32 |
Chromosome id | chr9 |
Chromosome position | 96054202 |
Reported gene | NR |
Mapped gene | ERCC6L2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 375748 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1547201-C |
SNPs | rs1547201 |
Merged | 0 |
SNP id current | 1547201 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.530244325912734 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (IGP5) |
Or beta | 0.1449 |
%95 Ci | [0.083-0.206] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |