SNP Detail For rs1546676
1.Mapping Information
Human SNP ID rs1546676
Human chromosome chr2
Human SNP position 153652726
Pig chromosome chr15
Pig SNP position 68392230
2.Annotation Information
PubMed ID25524916
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/25524916
StudyGenetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.
Disease/TraitGlucose homeostasis traits
Initial sampleup to 4,176 Mexican American individuals
Replication sampleNA
Region2q23.3
Chromosome idchr2
Chromosome position153652726
Reported geneintergenic
Mapped geneRPRM - DNAJA1P2
Upstream gene id56475
Downstream gene id100131207
SNP gene ids
Upstream gene distance173918
Downstream gene distance108562
SNP risk allelers1546676-?
SNPsrs1546676
Merged0
SNP id current1546676
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text(M)
Or beta23.62
%95 Ci[12.86-34.38] unit increase
PlatformIllumina [693128]
CNVN
Mapped traitinsulin sensitivity measurement, glucose homeostasis measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004471, http://www.ebi.ac.uk/efo/EFO_0006896
Study accessionGCST002726