SNP Detail For rs1544167
1.Mapping Information
Human SNP ID rs1544167
Human chromosome chr6
Human SNP position 159379992
Pig chromosome chr1
Pig SNP position 9771941
2.Annotation Information
PubMed ID25575512
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25575512
StudyEvidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.
Disease/TraitLipoprotein (a) - cholesterol levels
Initial sample1,376 Old Order Amish individuals
Replication sampleNA
Region6q25.3
Chromosome idchr6
Chromosome position159379992
Reported geneintergenic
Mapped geneLOC105378084
Upstream gene id
Downstream gene id
SNP gene ids105378084
Upstream gene distance
Downstream gene distance
SNP risk allelers1544167-?
SNPsrs1544167
Merged0
SNP id current1544167
Contextupstream_gene_variant
Intergenic0
Allele frequencyNR
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitlipoprotein A measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006925
Study accessionGCST002746