Human SNP ID | rs1541374 |
---|---|
Human chromosome | chr4 |
Human SNP position | 105127203 |
Pig chromosome | chr8 |
Pig SNP position | 125154353 |
PubMed ID | 21946350 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21946350 |
Study | Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. |
Disease/Trait | Pulmonary function |
Initial sample | 48,201 European ancestry individuals |
Replication sample | 46,411 European ancestry individuals |
Region | 4q24 |
Chromosome id | chr4 |
Chromosome position | 105127203 |
Reported gene | TET2 |
Mapped gene | LOC643675 - TET2 |
Upstream gene id | 643675 |
Downstream gene id | 54790 |
SNP gene ids | |
Upstream gene distance | 140502 |
Downstream gene distance | 18672 |
SNP risk allele | rs1541374-T |
SNPs | rs1541374 |
Merged | 0 |
SNP id current | 1541374 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (FEV1) |
Or beta | 0.026 |
%95 Ci | [0.016-0.036] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement, forced expiratory volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004314 |
Study accession | GCST001251 |