SNP Detail For rs1539019
1.Mapping Information
Human SNP ID rs1539019
Human chromosome chr1
Human SNP position 247436999
Pig chromosome chr2
Pig SNP position 57842617
2.Annotation Information
PubMed ID20031576
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031576
StudyAssociation of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.
Disease/TraitFibrinogen
Initial sample22,096 European ancestry individuals
Replication sample17,686 European ancestry female individuals
Region1q44
Chromosome idchr1
Chromosome position247436999
Reported geneNLRP3
Mapped geneNLRP3
Upstream gene id
Downstream gene id
SNP gene ids114548
Upstream gene distance
Downstream gene distance
SNP risk allelers1539019-A
SNPsrs1539019
Merged0
SNP id current1539019
Contextintron_variant
Intergenic0
Allele frequency0.37
P value0.00000001
Pvalue mlog8
P value text
Or beta0.04
%95 Ci[0.03-0.05] g/L decrease
PlatformAffymetrix, Illumina [~ 2661766] (imputed)
CNVN
Mapped traitfibrinogen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004623
Study accessionGCST000366