Human SNP ID | rs1537415 |
---|---|
Human chromosome | chr9 |
Human SNP position | 135637876 |
Pig chromosome | chr1 |
Pig SNP position | 293577018 |
PubMed ID | 19897590 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19897590 |
Study | A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis. |
Disease/Trait | Periodontitis |
Initial sample | 283 European ancestry cases, 972 European ancestry controls |
Replication sample | 155 European ancestry cases, 341 European ancestry controls |
Region | 9q34.3 |
Chromosome id | chr9 |
Chromosome position | 135637876 |
Reported gene | GLT6D1 |
Mapped gene | GLT6D1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 360203 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1537415-G |
SNPs | rs1537415 |
Merged | 0 |
SNP id current | 1537415 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 1.59 |
%95 Ci | [1.36-1.86] |
Platform | Affymetrix [345646] |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST000521 |