SNP Detail For rs1537415
1.Mapping Information
Human SNP ID rs1537415
Human chromosome chr9
Human SNP position 135637876
Pig chromosome chr1
Pig SNP position 293577018
2.Annotation Information
PubMed ID19897590
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19897590
StudyA genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis.
Disease/TraitPeriodontitis
Initial sample283 European ancestry cases, 972 European ancestry controls
Replication sample155 European ancestry cases, 341 European ancestry controls
Region9q34.3
Chromosome idchr9
Chromosome position135637876
Reported geneGLT6D1
Mapped geneGLT6D1
Upstream gene id
Downstream gene id
SNP gene ids360203
Upstream gene distance
Downstream gene distance
SNP risk allelers1537415-G
SNPsrs1537415
Merged0
SNP id current1537415
Contextintron_variant
Intergenic0
Allele frequency0.38
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta1.59
%95 Ci[1.36-1.86]
PlatformAffymetrix [345646]
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST000521