Human SNP ID | rs153734 |
---|---|
Human chromosome | chr3 |
Human SNP position | 64092333 |
Pig chromosome | chr13 |
Pig SNP position | 50092870 |
PubMed ID | 19303062 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19303062 |
Study | Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations. |
Disease/Trait | Folate pathway vitamin levels |
Initial sample | 2,934 European ancestry individuals |
Replication sample | 686 European ancestry individuals |
Region | 3p14.1 |
Chromosome id | chr3 |
Chromosome position | 64092333 |
Reported gene | PRICKLE2 |
Mapped gene | PRICKLE2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100652759 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs153734-T |
SNPs | rs153734 |
Merged | 0 |
SNP id current | 153734 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.84 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (folate) |
Or beta | 0.29 |
%95 Ci | [0.13-0.45] ng/ml increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | vitamin B measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004843 |
Study accession | GCST000358 |