SNP Detail For rs153734
1.Mapping Information
Human SNP ID rs153734
Human chromosome chr3
Human SNP position 64092333
Pig chromosome chr13
Pig SNP position 50092870
2.Annotation Information
PubMed ID19303062
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19303062
StudyGenome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.
Disease/TraitFolate pathway vitamin levels
Initial sample2,934 European ancestry individuals
Replication sample686 European ancestry individuals
Region3p14.1
Chromosome idchr3
Chromosome position64092333
Reported genePRICKLE2
Mapped genePRICKLE2-AS1
Upstream gene id
Downstream gene id
SNP gene ids100652759
Upstream gene distance
Downstream gene distance
SNP risk allelers153734-T
SNPsrs153734
Merged0
SNP id current153734
Contextintron_variant
Intergenic0
Allele frequency0.84
P value0.000007
Pvalue mlog5.15490195998574
P value text(folate)
Or beta0.29
%95 Ci[0.13-0.45] ng/ml increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitvitamin B measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004843
Study accessionGCST000358