SNP Detail For rs1536076
1.Mapping Information
Human SNP ID rs1536076
Human chromosome chr9
Human SNP position 17731923
Pig chromosome chr1
Pig SNP position 228869974
2.Annotation Information
PubMed ID22451204
JournalAnn Neurol
Linkwww.ncbi.nlm.nih.gov/pubmed/22451204
StudyMeta-analysis of Parkinson__s disease: identification of a novel locus, RIT2.
Disease/TraitParkinson__s disease
Initial sample4,238 European ancestry cases, 4,239 European ancestry controls
Replication sample3,738 European ancestry cases, 2,111 European ancestry controls
Region9p22.2
Chromosome idchr9
Chromosome position17731923
Reported geneSH3GL2
Mapped geneSH3GL2
Upstream gene id
Downstream gene id
SNP gene ids6456
Upstream gene distance
Downstream gene distance
SNP risk allelers1536076-?
SNPsrs1536076
Merged0
SNP id current1536076
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.16
%95 Ci[NR]
PlatformIllumina [2500000] (imputed)
CNVN
Mapped traitParkinson__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002508
Study accessionGCST001430