Human SNP ID | rs1535459 |
---|---|
Human chromosome | chr9 |
Human SNP position | 10550204 |
Pig chromosome | chr1 |
Pig SNP position | 236222027 |
PubMed ID | 26674333 |
---|---|
Journal | Neurology |
Link | www.ncbi.nlm.nih.gov/pubmed/26674333 |
Study | Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke. |
Disease/Trait | White matter hyperintensities in ischemic stroke |
Initial sample | 3,670 European ancestry cases |
Replication sample | NA |
Region | 9p23 |
Chromosome id | chr9 |
Chromosome position | 10550204 |
Reported gene | PTPRD |
Mapped gene | PTPRD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5789 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1535459-C |
SNPs | rs1535459 |
Merged | 0 |
SNP id current | 1535459 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.98 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.87 |
%95 Ci | [1.47鈥?.38] |
Platform | Affymetrix, Illumina [7567914] (imputed) |
CNV | N |
Mapped trait | Ischemic stroke, white matter hyperintensity measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0002140, http://www.ebi.ac.uk/efo/EFO_0005665 |
Study accession | GCST003245 |