SNP Detail For rs1535459
1.Mapping Information
Human SNP ID rs1535459
Human chromosome chr9
Human SNP position 10550204
Pig chromosome chr1
Pig SNP position 236222027
2.Annotation Information
PubMed ID26674333
JournalNeurology
Linkwww.ncbi.nlm.nih.gov/pubmed/26674333
StudyGenome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.
Disease/TraitWhite matter hyperintensities in ischemic stroke
Initial sample3,670 European ancestry cases
Replication sampleNA
Region9p23
Chromosome idchr9
Chromosome position10550204
Reported genePTPRD
Mapped genePTPRD
Upstream gene id
Downstream gene id
SNP gene ids5789
Upstream gene distance
Downstream gene distance
SNP risk allelers1535459-C
SNPsrs1535459
Merged0
SNP id current1535459
Contextintron_variant
Intergenic0
Allele frequency0.98
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.87
%95 Ci[1.47鈥?.38]
PlatformAffymetrix, Illumina [7567914] (imputed)
CNVN
Mapped traitIschemic stroke, white matter hyperintensity measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0002140, http://www.ebi.ac.uk/efo/EFO_0005665
Study accessionGCST003245