SNP Detail For rs1535454
1.Mapping Information
Human SNP ID rs1535454
Human chromosome chr9
Human SNP position 5410723
Pig chromosome chr3
Pig SNP position 100056707
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region9p24.1
Chromosome idchr9
Chromosome position5410723
Reported geneC9orf46
Mapped genePLGRKT
Upstream gene id
Downstream gene id
SNP gene ids55848
Upstream gene distance
Downstream gene distance
SNP risk allelers1535454-A
SNPsrs1535454
Merged0
SNP id current1535454
Contextintron_variant
Intergenic0
Allele frequency0.045
P value0.000003
Pvalue mlog5.52287874528033
P value text(TG )
Or beta0.03
%95 Ci[NR] mg/dL increase
PlatformIllumina [899892]
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST001762