SNP Detail For rs1531343
1.Mapping Information
Human SNP ID rs1531343
Human chromosome chr12
Human SNP position 65781114
Pig chromosome JH118649-1
Pig SNP position 252407
2.Annotation Information
PubMed ID20581827
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20581827
StudyTwelve type 2 diabetes susceptibility loci identified through large-scale association analysis.
Disease/TraitType 2 diabetes
Initial sample8,130 European ancestry cases, 38,987 European ancestry controls
Replication sampleUp to 34,412 European ancestry cases, 59,925 European ancestry controls
Region12q14.3
Chromosome idchr12
Chromosome position65781114
Reported geneHMGA2
Mapped geneRPSAP52
Upstream gene id
Downstream gene id
SNP gene ids204010
Upstream gene distance
Downstream gene distance
SNP risk allelers1531343-C
SNPsrs1531343
Merged0
SNP id current1531343
Contextintron_variant
Intergenic0
Allele frequency
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.1
%95 Ci[1.07-1.14]
PlatformAffymetrix, Illumina [2426886] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST000712