Human SNP ID | rs1531343 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65781114 |
Pig chromosome | JH118649-1 |
Pig SNP position | 252407 |
PubMed ID | 20581827 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20581827 |
Study | Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. |
Disease/Trait | Type 2 diabetes |
Initial sample | 8,130 European ancestry cases, 38,987 European ancestry controls |
Replication sample | Up to 34,412 European ancestry cases, 59,925 European ancestry controls |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65781114 |
Reported gene | HMGA2 |
Mapped gene | RPSAP52 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 204010 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1531343-C |
SNPs | rs1531343 |
Merged | 0 |
SNP id current | 1531343 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.07-1.14] |
Platform | Affymetrix, Illumina [2426886] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST000712 |