Human SNP ID | rs1531228 |
---|---|
Human chromosome | chr12 |
Human SNP position | 13476447 |
Pig chromosome | chr5 |
Pig SNP position | 62353156 |
PubMed ID | 22961001 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22961001 |
Study | Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett__s esophagus. |
Disease/Trait | Barrett__s esophagus |
Initial sample | Up to 1,852 European ancestry cases, 5,172 European ancestry controls |
Replication sample | 5,986 European ancestry cases, 12,825 European ancestry controls |
Region | 12p13.1 |
Chromosome id | chr12 |
Chromosome position | 13476447 |
Reported gene | NR |
Mapped gene | LINC01559 - GRIN2B |
Upstream gene id | 283422 |
Downstream gene id | 2904 |
SNP gene ids | |
Upstream gene distance | 99702 |
Downstream gene distance | 60890 |
SNP risk allele | rs1531228-? |
SNPs | rs1531228 |
Merged | 0 |
SNP id current | 1531228 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Circumference) |
Or beta | 0.2 |
%95 Ci | [0.10-0.30] unit increase |
Platform | Illumina [521744] |
CNV | N |
Mapped trait | Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST001675 |