SNP Detail For rs1531228
1.Mapping Information
Human SNP ID rs1531228
Human chromosome chr12
Human SNP position 13476447
Pig chromosome chr5
Pig SNP position 62353156
2.Annotation Information
PubMed ID22961001
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22961001
StudyCommon variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett__s esophagus.
Disease/TraitBarrett__s esophagus
Initial sampleUp to 1,852 European ancestry cases, 5,172 European ancestry controls
Replication sample5,986 European ancestry cases, 12,825 European ancestry controls
Region12p13.1
Chromosome idchr12
Chromosome position13476447
Reported geneNR
Mapped geneLINC01559 - GRIN2B
Upstream gene id283422
Downstream gene id2904
SNP gene ids
Upstream gene distance99702
Downstream gene distance60890
SNP risk allelers1531228-?
SNPsrs1531228
Merged0
SNP id current1531228
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(Circumference)
Or beta0.2
%95 Ci[0.10-0.30] unit increase
PlatformIllumina [521744]
CNVN
Mapped traitBarrett__s esophagus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000280
Study accessionGCST001675