Human SNP ID | rs1529672 |
---|---|
Human chromosome | chr3 |
Human SNP position | 25479091 |
Pig chromosome | chr13 |
Pig SNP position | 13999159 |
PubMed ID | 21946350 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21946350 |
Study | Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. |
Disease/Trait | Pulmonary function |
Initial sample | 48,201 European ancestry individuals |
Replication sample | 46,411 European ancestry individuals |
Region | 3p24.2 |
Chromosome id | chr3 |
Chromosome position | 25479091 |
Reported gene | RARB |
Mapped gene | RARB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5915 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1529672-C |
SNPs | rs1529672 |
Merged | 0 |
SNP id current | 1529672 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.83 |
P value | 0.00000000000004 |
Pvalue mlog | 13.397940008672 |
P value text | (FEV1/FVC) |
Or beta | 0.048 |
%95 Ci | [0.036-0.060] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement, FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001248 |
PubMed ID | 23284291 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
Disease/Trait | Pulmonary function (interaction) |
Initial sample | 50,047 European ancestry individuals |
Replication sample | NA |
Region | 3p24.2 |
Chromosome id | chr3 |
Chromosome position | 25479091 |
Reported gene | RARB |
Mapped gene | RARB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5915 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1529672-? |
SNPs | rs1529672 |
Merged | 0 |
SNP id current | 1529672 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000007 |
Pvalue mlog | 10.1549019599857 |
P value text | (FEV1/FVC, Pack-years) |
Or beta | |
%95 Ci | |
Platform | NR [~ 2500000] (imputed) |
CNV | N |
Mapped trait | FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001784 |