SNP Detail For rs1529093
1.Mapping Information
Human SNP ID rs1529093
Human chromosome chr2
Human SNP position 177044867
Pig chromosome chr15
Pig SNP position 92261150
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (other)
Initial sample236 European ancestry cases
Replication sampleNA
Region2q31.1
Chromosome idchr2
Chromosome position177044867
Reported geneintergenic
Mapped geneLOC105373761 - LOC105373760
Upstream gene id105373761
Downstream gene id105373760
SNP gene ids
Upstream gene distance9845
Downstream gene distance19452
SNP risk allelers1529093-A
SNPsrs1529093
Merged0
SNP id current1529093
Contextintron_variant
Intergenic1
Allele frequency0.41
P value0.000002
Pvalue mlog5.69897000433601
P value text(BallonTT)
Or beta4.13
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000765