Human SNP ID | rs152784 |
---|---|
Human chromosome | chr5 |
Human SNP position | 133436739 |
Pig chromosome | chr2 |
Pig SNP position | 141371334 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 133436739 |
Reported gene | FSTL4 |
Mapped gene | FSTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23105 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs152784-A |
SNPs | rs152784 |
Merged | 0 |
SNP id current | 152784 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.041 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.144 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341 |
Study accession | GCST003263 |