SNP Detail For rs152784
1.Mapping Information
Human SNP ID rs152784
Human chromosome chr5
Human SNP position 133436739
Pig chromosome chr2
Pig SNP position 141371334
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1 in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position133436739
Reported geneFSTL4
Mapped geneFSTL4
Upstream gene id
Downstream gene id
SNP gene ids23105
Upstream gene distance
Downstream gene distance
SNP risk allelers152784-A
SNPsrs152784
Merged0
SNP id current152784
Contextintron_variant
Intergenic0
Allele frequency0.041
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.144
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341
Study accessionGCST003263