SNP Detail For rs1525739
1.Mapping Information
Human SNP ID rs1525739
Human chromosome chr7
Human SNP position 16850188
Pig chromosome chr8
Pig SNP position 111537139
2.Annotation Information
PubMed ID23386860
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23386860
StudyExploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.
Disease/TraitType 2 diabetes (dietary heme iron intake interaction)
Initial sample1,806 European ancestry cases, 2,965 European ancestry controls
Replication sampleNA
Region7p21.1
Chromosome idchr7
Chromosome position16850188
Reported geneAGR2, AGR3
Mapped geneLOC100287613
Upstream gene id
Downstream gene id
SNP gene ids100287613
Upstream gene distance
Downstream gene distance
SNP risk allelers1525739-?
SNPsrs1525739
Merged0
SNP id current1525739
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.44
%95 Ci[NR] unit decrease
PlatformAffymetrix [681770]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST001843