SNP Detail For rs1525293
1.Mapping Information
Human SNP ID rs1525293
Human chromosome chr7
Human SNP position 71008019
Pig chromosome chr3
Pig SNP position 15193321
2.Annotation Information
PubMed ID23377640
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23377640
StudyCommon genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
Disease/TraitMajor depressive disorder
Initial sampleUp to 2,256 European ancestry cases
Replication sampleNA
Region7q11.22
Chromosome idchr7
Chromosome position71008019
Reported geneWBSCR17
Mapped geneAUTS2 - WBSCR17
Upstream gene id26053
Downstream gene id64409
SNP gene ids
Upstream gene distance214951
Downstream gene distance124395
SNP risk allelers1525293-C
SNPsrs1525293
Merged0
SNP id current1525293
Contextintergenic_variant
Intergenic1
Allele frequency0.66
P value0.000002
Pvalue mlog5.69897000433601
P value text(remission - SSRI treated - 12 weeks)
Or beta1.7041
%95 Ci[1.48-1.92]
PlatformAffymetrix, Illumina [1200000] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST001850