SNP Detail For rs152439
1.Mapping Information
Human SNP ID rs152439
Human chromosome chr5
Human SNP position 142544830
Pig chromosome chr2
Pig SNP position 150272090
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region5q31.3
Chromosome idchr5
Chromosome position142544830
Reported geneNR
Mapped geneLOC101926941 - FGF1
Upstream gene id101926941
Downstream gene id2246
SNP gene ids
Upstream gene distance80776
Downstream gene distance47348
SNP risk allelers152439-?
SNPsrs152439
Merged0
SNP id current152439
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279