Human SNP ID | rs152439 |
---|---|
Human chromosome | chr5 |
Human SNP position | 142544830 |
Pig chromosome | chr2 |
Pig SNP position | 150272090 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | PR interval in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 5q31.3 |
Chromosome id | chr5 |
Chromosome position | 142544830 |
Reported gene | NR |
Mapped gene | LOC101926941 - FGF1 |
Upstream gene id | 101926941 |
Downstream gene id | 2246 |
SNP gene ids | |
Upstream gene distance | 80776 |
Downstream gene distance | 47348 |
SNP risk allele | rs152439-? |
SNPs | rs152439 |
Merged | 0 |
SNP id current | 152439 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | PR interval, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002279 |