SNP Detail For rs1520832
1.Mapping Information
Human SNP ID rs1520832
Human chromosome chr12
Human SNP position 42859612
Pig chromosome chr5
Pig SNP position 76664651
2.Annotation Information
PubMed ID20445134
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20445134
StudyAssociation of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.
Disease/TraitHeart failure
Initial sample20,926 European ancestry individuals, 2,895 African ancestry individuals
Replication sampleNA
Region12q12
Chromosome idchr12
Chromosome position42859612
Reported genePRICKLE1
Mapped geneLOC105369739 - LOC105369740
Upstream gene id105369739
Downstream gene id105369740
SNP gene ids
Upstream gene distance142514
Downstream gene distance294831
SNP risk allelers1520832-?
SNPsrs1520832
Merged0
SNP id current1520832
Contextregulatory_region_variant
Intergenic1
Allele frequency0.04
P value0.000001
Pvalue mlog6
P value text(EA)
Or beta1.39
%95 Ci[0.99-1.95]
PlatformAffymetrix, Illumina [2478304] (imputed)
CNVN
Mapped traitheart failure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003144
Study accessionGCST000675