Human SNP ID | rs1520832 |
---|---|
Human chromosome | chr12 |
Human SNP position | 42859612 |
Pig chromosome | chr5 |
Pig SNP position | 76664651 |
PubMed ID | 20445134 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20445134 |
Study | Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. |
Disease/Trait | Heart failure |
Initial sample | 20,926 European ancestry individuals, 2,895 African ancestry individuals |
Replication sample | NA |
Region | 12q12 |
Chromosome id | chr12 |
Chromosome position | 42859612 |
Reported gene | PRICKLE1 |
Mapped gene | LOC105369739 - LOC105369740 |
Upstream gene id | 105369739 |
Downstream gene id | 105369740 |
SNP gene ids | |
Upstream gene distance | 142514 |
Downstream gene distance | 294831 |
SNP risk allele | rs1520832-? |
SNPs | rs1520832 |
Merged | 0 |
SNP id current | 1520832 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.04 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA) |
Or beta | 1.39 |
%95 Ci | [0.99-1.95] |
Platform | Affymetrix, Illumina [2478304] (imputed) |
CNV | N |
Mapped trait | heart failure |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003144 |
Study accession | GCST000675 |