SNP Detail For rs1517037
1.Mapping Information
Human SNP ID rs1517037
Human chromosome chr18
Human SNP position 59211042
Pig chromosome chr1
Pig SNP position 179423055
2.Annotation Information
PubMed ID26098869
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26098869
StudyCommon variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.
Disease/TraitPancreatic cancer
Initial sample7,638 cases, 7,364 controls
Replication sample2,287 cases, 4,205 controls
Region18q21.32
Chromosome idchr18
Chromosome position59211042
Reported geneGRP
Mapped geneSEC11C - GRP
Upstream gene id90701
Downstream gene id2922
SNP gene ids
Upstream gene distance52205
Downstream gene distance8076
SNP risk allelers1517037-C
SNPsrs1517037
Merged
SNP id current1517037
Contextintergenic_variant
Intergenic1
Allele frequency0.818
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.1494253
%95 Ci[1.09-1.2]
PlatformIllumina [866891] (imputed)
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST002991
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region18q21.32
Chromosome idchr18
Chromosome position59211042
Reported geneNR
Mapped geneSEC11C - GRP
Upstream gene id90701
Downstream gene id2922
SNP gene ids
Upstream gene distance52205
Downstream gene distance8076
SNP risk allelers1517037-?
SNPsrs1517037
Merged
SNP id current1517037
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044