Human SNP ID | rs1517037 |
---|---|
Human chromosome | chr18 |
Human SNP position | 59211042 |
Pig chromosome | chr1 |
Pig SNP position | 179423055 |
PubMed ID | 26098869 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26098869 |
Study | Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer. |
Disease/Trait | Pancreatic cancer |
Initial sample | 7,638 cases, 7,364 controls |
Replication sample | 2,287 cases, 4,205 controls |
Region | 18q21.32 |
Chromosome id | chr18 |
Chromosome position | 59211042 |
Reported gene | GRP |
Mapped gene | SEC11C - GRP |
Upstream gene id | 90701 |
Downstream gene id | 2922 |
SNP gene ids | |
Upstream gene distance | 52205 |
Downstream gene distance | 8076 |
SNP risk allele | rs1517037-C |
SNPs | rs1517037 |
Merged | |
SNP id current | 1517037 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.818 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.1494253 |
%95 Ci | [1.09-1.2] |
Platform | Illumina [866891] (imputed) |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST002991 |
PubMed ID | 26192919 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26192919 |
Study | Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. |
Disease/Trait | Crohn__s disease |
Initial sample | 5,956 European ancestry cases, 14,927 European ancestry controls |
Replication sample | 14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls |
Region | 18q21.32 |
Chromosome id | chr18 |
Chromosome position | 59211042 |
Reported gene | NR |
Mapped gene | SEC11C - GRP |
Upstream gene id | 90701 |
Downstream gene id | 2922 |
SNP gene ids | |
Upstream gene distance | 52205 |
Downstream gene distance | 8076 |
SNP risk allele | rs1517037-? |
SNPs | rs1517037 |
Merged | |
SNP id current | 1517037 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (EA) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST003044 |