SNP Detail For rs1514092
1.Mapping Information
Human SNP ID rs1514092
Human chromosome chr11
Human SNP position 22503808
Pig chromosome chr2
Pig SNP position 40191634
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region11p14.3
Chromosome idchr11
Chromosome position22503808
Reported geneNR
Mapped geneLOC105376588
Upstream gene id
Downstream gene id
SNP gene ids105376588
Upstream gene distance
Downstream gene distance
SNP risk allelers1514092-?
SNPsrs1514092
Merged
SNP id current1514092
Contextdownstream_gene_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta0.264
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957