Human SNP ID | rs1512777 |
---|---|
Human chromosome | chr3 |
Human SNP position | 144736294 |
Pig chromosome | chr13 |
Pig SNP position | 92999934 |
PubMed ID | 25461247 |
---|---|
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/25461247 |
Study | Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols. |
Disease/Trait | Response to efavirenz-containing treatment in HIV 1 infection (virologic failure) |
Initial sample | Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals |
Replication sample | NA |
Region | 3q24 |
Chromosome id | chr3 |
Chromosome position | 144736294 |
Reported gene | NR |
Mapped gene | LOC105374140 - LOC105374141 |
Upstream gene id | 105374140 |
Downstream gene id | 105374141 |
SNP gene ids | |
Upstream gene distance | 261118 |
Downstream gene distance | 148315 |
SNP risk allele | rs1512777-T |
SNPs | rs1512777 |
Merged | 0 |
SNP id current | 1512777 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (phenotype 2) |
Or beta | 1.92 |
%95 Ci | [NR] |
Platform | Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, response to efavirenz, virologic response measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906 |
Study accession | GCST002771 |