SNP Detail For rs1512777
1.Mapping Information
Human SNP ID rs1512777
Human chromosome chr3
Human SNP position 144736294
Pig chromosome chr13
Pig SNP position 92999934
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to efavirenz-containing treatment in HIV 1 infection (virologic failure)
Initial sampleUp to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals
Replication sampleNA
Region3q24
Chromosome idchr3
Chromosome position144736294
Reported geneNR
Mapped geneLOC105374140 - LOC105374141
Upstream gene id105374140
Downstream gene id105374141
SNP gene ids
Upstream gene distance261118
Downstream gene distance148315
SNP risk allelers1512777-T
SNPsrs1512777
Merged0
SNP id current1512777
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(phenotype 2)
Or beta1.92
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, response to efavirenz, virologic response measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906
Study accessionGCST002771