SNP Detail For rs150639459
1.Mapping Information
Human SNP ID rs150639459
Human chromosome chr8
Human SNP position 18947176
Pig chromosome chr17
Pig SNP position 13608753
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region8p22
Chromosome idchr8
Chromosome position18947176
Reported genePSD3
Mapped genePSD3
Upstream gene id
Downstream gene id
SNP gene ids23362
Upstream gene distance
Downstream gene distance
SNP risk allelers150639459-C
SNPsrs150639459
Merged
SNP id current150639459
Contextintron_variant
Intergenic0
Allele frequency0.01
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta0.415
%95 Ci[0.24-0.59] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region8p22
Chromosome idchr8
Chromosome position18947176
Reported genePSD3
Mapped genePSD3
Upstream gene id
Downstream gene id
SNP gene ids23362
Upstream gene distance
Downstream gene distance
SNP risk allelers150639459-C
SNPsrs150639459
Merged
SNP id current150639459
Contextintron_variant
Intergenic0
Allele frequency0.01
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta0.4091
%95 Ci[0.25-0.57] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075