Human SNP ID | rs150639459 |
---|---|
Human chromosome | chr8 |
Human SNP position | 18947176 |
Pig chromosome | chr17 |
Pig SNP position | 13608753 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 8p22 |
Chromosome id | chr8 |
Chromosome position | 18947176 |
Reported gene | PSD3 |
Mapped gene | PSD3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23362 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs150639459-C |
SNPs | rs150639459 |
Merged | |
SNP id current | 150639459 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (EA) |
Or beta | 0.415 |
%95 Ci | [0.24-0.59] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 8p22 |
Chromosome id | chr8 |
Chromosome position | 18947176 |
Reported gene | PSD3 |
Mapped gene | PSD3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23362 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs150639459-C |
SNPs | rs150639459 |
Merged | |
SNP id current | 150639459 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 0.4091 |
%95 Ci | [0.25-0.57] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |