SNP Detail For rs1505992
1.Mapping Information
Human SNP ID rs1505992
Human chromosome chr5
Human SNP position 40498475
Pig chromosome chr16
Pig SNP position 26789572
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region5p13.1
Chromosome idchr5
Chromosome position40498475
Reported geneNR
Mapped geneLOC105374736 - LOC105374737
Upstream gene id105374736
Downstream gene id105374737
SNP gene ids
Upstream gene distance151920
Downstream gene distance101405
SNP risk allelers1505992-A
SNPsrs1505992
Merged
SNP id current1505992
Contextintergenic_variant
Intergenic1
Allele frequency0.68
P value7E-32
Pvalue mlog31.1549019599857
P value text(EA)
Or beta1.1339794
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043