SNP Detail For rs150400940
1.Mapping Information
Human SNP ID rs150400940
Human chromosome chr10
Human SNP position 112050671
Pig chromosome chr14
Pig SNP position 133393298
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region10q25.2
Chromosome idchr10
Chromosome position112050671
Reported geneNR
Mapped geneLOC105378486
Upstream gene id
Downstream gene id
SNP gene ids105378486
Upstream gene distance
Downstream gene distance
SNP risk allelers150400940-?
SNPsrs150400940
Merged
SNP id current150400940
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta0.3888
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956