SNP Detail For rs150343078
1.Mapping Information
Human SNP ID rs150343078
Human chromosome chr3
Human SNP position 2831489
Pig chromosome chr13
Pig SNP position 65704099
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region3p26.2
Chromosome idchr3
Chromosome position2831489
Reported geneCNTN4
Mapped geneLOC105376926, CNTN4
Upstream gene id
Downstream gene id
SNP gene ids105376926, 152330
Upstream gene distance
Downstream gene distance
SNP risk allelers150343078-T
SNPsrs150343078
Merged0
SNP id current150343078
Contextintron_variant
Intergenic0
Allele frequency0.999
P value0.0000003
Pvalue mlog6.52287874528033
P value text(AA)
Or beta0.44
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264