SNP Detail For rs1501908
1.Mapping Information
Human SNP ID rs1501908
Human chromosome chr5
Human SNP position 156971158
Pig chromosome chr16
Pig SNP position 72150717
2.Annotation Information
PubMed ID19060906
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19060906
StudyCommon variants at 30 loci contribute to polygenic dyslipidemia.
Disease/TraitLDL cholesterol
Initial sample19,840 European ancestry individuals
Replication sampleUp to 20,623 European ancestry individuals
Region5q33.3
Chromosome idchr5
Chromosome position156971158
Reported geneTIMD4, HAVCR1
Mapped geneTIMD4
Upstream gene id
Downstream gene id
SNP gene ids91937
Upstream gene distance
Downstream gene distance
SNP risk allelers1501908-G
SNPsrs1501908
Merged0
SNP id current1501908
Contextintergenic_variant
Intergenic0
Allele frequency0.37
P value0.00000000001
Pvalue mlog11
P value text
Or beta0.07
%95 Ci[0.03-0.11] s.d. decrease
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST000287