Human SNP ID | rs1501908 |
---|---|
Human chromosome | chr5 |
Human SNP position | 156971158 |
Pig chromosome | chr16 |
Pig SNP position | 72150717 |
PubMed ID | 19060906 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060906 |
Study | Common variants at 30 loci contribute to polygenic dyslipidemia. |
Disease/Trait | LDL cholesterol |
Initial sample | 19,840 European ancestry individuals |
Replication sample | Up to 20,623 European ancestry individuals |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 156971158 |
Reported gene | TIMD4, HAVCR1 |
Mapped gene | TIMD4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 91937 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1501908-G |
SNPs | rs1501908 |
Merged | 0 |
SNP id current | 1501908 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.03-0.11] s.d. decrease |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST000287 |